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PUBLISHED WORK

The Fruits of Our Labor

Aulas A, Lyons SM, Fay MM, Ivanov P, Anderson P. (2018) Nitric oxide triggers the assembly of “type II” stress granules linked to decreased cell viability. Cell Death and Disease. 9(11):1129

Lyons SM, Fay MM, Ivanov P. (2018) The role of RNA modifications in tRNA cleavage. FEBS Letters. 592: 2828 – 2844

Lyons SM, Gudanis D, Gdaniec Z, Ivanov P. (2017) Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs. Nature Communications. 8(1):2020

Fay MM, Lyons SM, Ivanov P. (2017) RNA G-quadruplexes in biology: Principles and molecular mechanisms. Journal of Molecular Biology. 429(14): 2127 - 2147

Aulas A, Fay MM, Lyons SM, Achorn, CA, Kedersha, N, Anderson P, Ivanov P. (2017) Stress specific differences in assembly and composition of stress granules and related foci. Journal of Cell Science. 130(5) 927- 937

Lyons SM, Fay MM, Akiyama Y, Anderson PJ, Ivanov P. (2017) RNA biology of angiogenin: Current state and perspectives. RNA Biology. 14(2): 171 – 178

Lyons SM, Cunningham CH, Welch JD, Groh B, Guo AY, Wei B, Whitfield ML, Xiong Y, Marzluff WF. (2016) A subset of replication dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues. Nucleic Acids Research. 44(19), 9190-9205

Lyons SM, Anderson P (2016) RNA-seeded functional amyloids balance growth and survival. Developmental Cell. 39(2): 131-132

Lyons SM, Achorn C, Kedersha NL, Anderson PJ, Ivanov P. (2016) YB-1 regulates tiRNA-induced stress granule formation but not translational repression. Nucleic Acids Research. 44(14): 6949 – 6960

Mineo M, Rickles F, Rooj AK,Lyons SM, Ivanov P, Ansari KI, Nakano I, Chiocca EA, Godlewski, Bronisz A. (2016) The long non-coding RNA HIF1A-AS2 facilitates the maintenance of mesenchymal glioblastoma stem-like cells in hypoxic niches. Cell Reports: 15(11), 2500 – 2509

Kedersha N, Panas MD, Achorn CA, Lyons SM, Tisdale S, Hickman T, Thomas M, Lieberman J, McInerney GM, Ivanov P, Anderson P(2016) G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits. Journal of Cell Biology. 212(7): 845 – 860

Lyons SM,Fay MM, Ivanov PI. (2016) Regulated tRNA cleavage in biology and medicine: Roles of tRNA modifications. Modified nucleic acids in biology and medicine. S. Jurga, V. Erdmann and J. Barciszweski. New York, NY, Springer Berlin Heidelberg: 27 – 54

Johnson ME, Grassetti, AV, Taroni JN, Lyons SM, Schweppe D, Gordon JK, Spiera RF, Lafyatis R, Anderson PJ, Gerber SA, Whitfield ML (2016). Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis. Arthritis Research and Therapy. 18(1): 27

Brooks L, Lyons SM, Mahoney JM, Liu Z, Marzluff WF, Whitfield ML. (2015) A multiprotein occupancy map of the mRNP on the 3’ end of histone mRNAs. RNA. 21(11) 1943 – 1965

Terzo EA, Lyons SM, Poulton JS, Temple BRS Marzluff WF, Duronio RJ.  Distinct self-interaction domains promote Multiple Sex Combs accumulation in and formation of the Drosophila Histone Locus Body. (2015). Molecular Biology of the Cell. 26(8): 1559 – 1574 

Lyons SM, Guo AY, Ricciardi AS, Kambach KS, Marzluff WF.  (2014) The C-terminal extension of Lsm4 interacts directly with the 3’ end of the histone mRNP and is required for efficient histone mRNA. RNA. 20(1) 88 – 102 

Su W, Slepenkov SV, Slevin MK, Lyons SM, Ziemniak M, Kowalska J, Darzynkiewicz E, Jemielity J, Marzluff WF, Rhoads RE. (2013) 3’-Oligouridylation is an obligatory step for degradation of an mRNA containing the histone 3’-Stem-Loop. RNA.19(1): 1-16

Martin L, Meier M, Lyons SM, Sit RV, Marzluff WF, Quake SR, Chang HY. (2012) Systematic reconstruction of RNA functional motifs with high-throughput microfluidics. Nature Methods. 9(12): 1192 -1194

Yang T, Lyons S,Aguilar C, Cuhel R, Teske A. (2011).  Microbial communities and chemosynthesis in Yellowstone Lake sublacustrine hydrothermal vent waters. Frontiers in Microbiology. 2:130.